J4_7B7D_013

3D structure

PDB id

7B7D (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast 80S ribosome bound to eEF3 and A/A- and P/P-tRNAs

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

GUGAC*GCGC*GAUGUCC*GC

Length

18 nucleotides

Bulged bases

7B7D|1|Sn|U|47, 7B7D|1|Sn|C|48

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

7B7D|1|Sn|G|7
7B7D|1|Sn|U|8
7B7D|1|Sn|G|9
7B7D|1|Sn|A|10
7B7D|1|Sn|C|11
*
7B7D|1|Sn|G|24
7B7D|1|Sn|C|25
7B7D|1|Sn|G|26
7B7D|1|Sn|C|27
*
7B7D|1|Sn|G|43
7B7D|1|Sn|A|44
7B7D|1|Sn|U|45
7B7D|1|Sn|G|46
7B7D|1|Sn|U|47
7B7D|1|Sn|C|48
7B7D|1|Sn|C|49
*
7B7D|1|Sn|G|65
7B7D|1|Sn|C|66

Current chains

Chain Sn

tRNA

Nearby chains

Chain K

40S ribosomal protein S25-A

Chain LA

Large subunit ribosomal RNA; LSU rRNA

Chain LL

60S ribosomal protein L10