J4_7BGD_002

3D structure

PDB id

7BGD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Staphylococcus aureus 30S ribosomal subunit in presence of spermidine (body only)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

GAC*GAUAAUA*UGAAAG*CAC

Length

19 nucleotides

Bulged bases

7BGD|1|a|U|183

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

7BGD|1|a|G|142
7BGD|1|a|A|143
7BGD|1|a|C|144
*
7BGD|1|a|G|178
7BGD|1|a|A|179
7BGD|1|a|U|180
7BGD|1|a|A|181
7BGD|1|a|A|182
7BGD|1|a|U|183
7BGD|1|a|A|184
*
7BGD|1|a|U|208
7BGD|1|a|G|209
7BGD|1|a|A|210
7BGD|1|a|A|211
7BGD|1|a|A|212
7BGD|1|a|G|213
*
7BGD|1|a|C|227
7BGD|1|a|A|228
7BGD|1|a|C|229

Current chains

Chain a

16S ribosomal RNA

Nearby chains

Chain p

30S ribosomal protein S16

Chain t

30S ribosomal protein S20