J4_7BL2_002

3D structure

PDB id

7BL2 (explore in PDB, NAKB, or RNA 3D Hub)

Description

pre-50S-ObgE particle state 1

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

GGAAG*CGCG*CAG*CGUAC

Length

17 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_7BL2_002 not in the Motif Atlas

Homologous match to J4_5J7L_019

Geometric discrepancy: 0.1296

The information below is about J4_5J7L_019

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_71729.5

Basepair signature

cWW-tSH-cHH-F-F-tHS-cWW-cWW-F-F-cWW

Number of instances in this motif group

4

Unit IDs

7BL2|1|A|G|297
7BL2|1|A|G|298
7BL2|1|A|A|299
7BL2|1|A|A|300
7BL2|1|A|G|301
*
7BL2|1|A|C|316
7BL2|1|A|G|317
7BL2|1|A|C|318
7BL2|1|A|G|319
*
7BL2|1|A|C|323
7BL2|1|A|A|324
7BL2|1|A|G|325
*
7BL2|1|A|C|337
7BL2|1|A|G|338
7BL2|1|A|U|339
7BL2|1|A|A|340
7BL2|1|A|C|341

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain E

50S ribosomal protein L4

Chain U

50S ribosomal protein L24