J4_7BL2_009

3D structure

PDB id

7BL2 (explore in PDB, NAKB, or RNA 3D Hub)

Description

pre-50S-ObgE particle state 1

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

CUG*CG*CCUAAGGUAG*CGAAUG

Length

21 nucleotides

Bulged bases

7BL2|1|A|C|1925, 7BL2|1|A|U|1971

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_7BL2_009 not in the Motif Atlas

Homologous match to J4_5J7L_026

Geometric discrepancy: 0.4056

The information below is about J4_5J7L_026

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_93343.1

Basepair signature

cWW-tSS-cSS-cWH-cWW-tWH-tHS-cWW-cWW-tWW-F-cSH-F-F

Number of instances in this motif group

4

Unit IDs

7BL2|1|A|C|1833
7BL2|1|A|U|1834
7BL2|1|A|G|1835
*
7BL2|1|A|C|1905
7BL2|1|A|G|1906
*
7BL2|1|A|C|1924
7BL2|1|A|C|1925
7BL2|1|A|U|1926
7BL2|1|A|A|1927
7BL2|1|A|A|1928
7BL2|1|A|G|1929
7BL2|1|A|G|1930
7BL2|1|A|U|1931
7BL2|1|A|A|1932
7BL2|1|A|G|1933
*
7BL2|1|A|C|1967
7BL2|1|A|G|1968
7BL2|1|A|A|1969
7BL2|1|A|A|1970
7BL2|1|A|U|1971
7BL2|1|A|G|1972

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain C

50S ribosomal protein L2