J4_7BL4_002

3D structure

PDB id

7BL4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

in vitro reconstituted 50S-ObgE-GMPPNP-RsfS particle

Experimental method

ELECTRON MICROSCOPY

Resolution

2.4 Å

Loop

Sequence

GGAAG*CGCG*CAG*CGUAC

Length

17 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_7BL4_002 not in the Motif Atlas

Homologous match to J4_5J7L_019

Geometric discrepancy: 0.105

The information below is about J4_5J7L_019

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_71729.5

Basepair signature

cWW-tSH-cHH-F-F-tHS-cWW-cWW-F-F-cWW

Number of instances in this motif group

4

Unit IDs

7BL4|1|A|G|297
7BL4|1|A|G|298
7BL4|1|A|A|299
7BL4|1|A|A|300
7BL4|1|A|G|301
*
7BL4|1|A|C|316
7BL4|1|A|G|317
7BL4|1|A|C|318
7BL4|1|A|G|319
*
7BL4|1|A|C|323
7BL4|1|A|A|324
7BL4|1|A|G|325
*
7BL4|1|A|C|337
7BL4|1|A|G|338
7BL4|1|A|U|339
7BL4|1|A|A|340
7BL4|1|A|C|341

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain E

50S ribosomal protein L4

Chain U

50S ribosomal protein L24