J4_7BL5_002

3D structure

PDB id

7BL5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

pre-50S-ObgE particle

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

GGAAG*CGCG*CAG*CGUAC

Length

17 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_7BL5_002 not in the Motif Atlas

Homologous match to J4_5J7L_019

Geometric discrepancy: 0.1357

The information below is about J4_5J7L_019

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_71729.5

Basepair signature

cWW-tSH-cHH-F-F-tHS-cWW-cWW-F-F-cWW

Number of instances in this motif group

4

Unit IDs

7BL5|1|A|G|297
7BL5|1|A|G|298
7BL5|1|A|A|299
7BL5|1|A|A|300
7BL5|1|A|G|301
*
7BL5|1|A|C|316
7BL5|1|A|G|317
7BL5|1|A|C|318
7BL5|1|A|G|319
*
7BL5|1|A|C|323
7BL5|1|A|A|324
7BL5|1|A|G|325
*
7BL5|1|A|C|337
7BL5|1|A|G|338
7BL5|1|A|U|339
7BL5|1|A|A|340
7BL5|1|A|C|341

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain E

50S ribosomal protein L4

Chain U

50S ribosomal protein L24