3D structure

PDB id
7BOI (explore in PDB, NAKB, or RNA 3D Hub)
Description
Bacterial 30S ribosomal subunit assembly complex state F (multibody refinement for body domain of 30S ribosome)
Experimental method
ELECTRON MICROSCOPY
Resolution
2.98 Å

Loop

Sequence
GCG*CGAAAG*CCGUAAACGAUG*CC
Length
23 nucleotides
Bulged bases
7BOI|1|A|C|576, 7BOI|1|A|A|815
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J4_7BOI_003 not in the Motif Atlas
Homologous match to J4_5J7L_003
Geometric discrepancy: 0.0626
The information below is about J4_5J7L_003
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J4_61885.6
Basepair signature
cWW-cWW-cWW-F-F-tHW-F-F-F-F-F-cWW-F-F
Number of instances in this motif group
4

Unit IDs

7BOI|1|A|G|575
7BOI|1|A|C|576
7BOI|1|A|G|577
*
7BOI|1|A|C|764
7BOI|1|A|G|765
7BOI|1|A|A|766
7BOI|1|A|A|767
7BOI|1|A|A|768
7BOI|1|A|G|769
*
7BOI|1|A|C|810
7BOI|1|A|C|811
7BOI|1|A|G|812
7BOI|1|A|U|813
7BOI|1|A|A|814
7BOI|1|A|A|815
7BOI|1|A|A|816
7BOI|1|A|C|817
7BOI|1|A|G|818
7BOI|1|A|A|819
7BOI|1|A|U|820
7BOI|1|A|G|821
*
7BOI|1|A|C|879
7BOI|1|A|C|880

Current chains

Chain A
16S rRNA

Nearby chains

Chain H
30S ribosomal protein S8
Chain L
30S ribosomal protein S12
Chain O
30S ribosomal protein S15
Chain Q
30S ribosomal protein S17
Chain U
30S ribosomal protein S21

Coloring options:


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