J4_7BV8_003

3D structure

PDB id

7BV8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mature 50S ribosomal subunit from RrmJ knock out E.coli strain

Experimental method

ELECTRON MICROSCOPY

Resolution

3.14 Å

Loop

Sequence

CAAG*CGAAG*CGAG*CGUUAAG

Length

20 nucleotides

Bulged bases

7BV8|1|A|A|654

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_7BV8_003 not in the Motif Atlas

Homologous match to J4_5J7L_020

Geometric discrepancy: 0.168

The information below is about J4_5J7L_020

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_60168.1

Basepair signature

cWW-F-F-F-F-F-cWW-F-F-F-cWW-F-tSS-F-cWW

Number of instances in this motif group

2

Unit IDs

7BV8|1|A|C|601
7BV8|1|A|A|602
7BV8|1|A|A|603
7BV8|1|A|G|604
*
7BV8|1|A|C|624
7BV8|1|A|G|625
7BV8|1|A|A|626
7BV8|1|A|A|627
7BV8|1|A|G|628
*
7BV8|1|A|C|635
7BV8|1|A|G|636
7BV8|1|A|A|637
7BV8|1|A|G|638
*
7BV8|1|A|C|650
7BV8|1|A|G|651
7BV8|1|A|U|652
7BV8|1|A|U|653
7BV8|1|A|A|654
7BV8|1|A|A|655
7BV8|1|A|G|656

Current chains

Chain A

23S rRNA

Nearby chains

Chain E

50S ribosomal protein L4

Chain M

50S ribosomal protein L15

Chain e

50S ribosomal protein L35