J4_7BV8_005

3D structure

PDB id

7BV8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mature 50S ribosomal subunit from RrmJ knock out E.coli strain

Experimental method

ELECTRON MICROSCOPY

Resolution

3.14 Å

Loop

Sequence

GGUUC*GGUGAG*CU*AAUCGUAC

Length

21 nucleotides

Bulged bases

7BV8|1|A|G|1341

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_7BV8_005 not in the Motif Atlas

Homologous match to J4_5J7L_022

Geometric discrepancy: 0.0904

The information below is about J4_5J7L_022

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_69051.6

Basepair signature

cWW-F-cWW-F-tHW-F-cWW-F-F-F-F-F-cWW-cWW

Number of instances in this motif group

7

Unit IDs

7BV8|1|A|G|1310
7BV8|1|A|G|1311
7BV8|1|A|U|1312
7BV8|1|A|U|1313
7BV8|1|A|C|1314
*
7BV8|1|A|G|1338
7BV8|1|A|G|1339
7BV8|1|A|U|1340
7BV8|1|A|G|1341
7BV8|1|A|A|1342
7BV8|1|A|G|1343
*
7BV8|1|A|C|1404
7BV8|1|A|U|1405
*
7BV8|1|A|A|1597
7BV8|1|A|A|1598
7BV8|1|A|U|1599
7BV8|1|A|C|1600
7BV8|1|A|G|1601
7BV8|1|A|U|1602
7BV8|1|A|A|1603
7BV8|1|A|C|1604

Current chains

Chain A

23S rRNA

Nearby chains

Chain U

50S ribosomal protein L23

Chain d

50S ribosomal protein L34