J4_7BV8_009

3D structure

PDB id

7BV8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mature 50S ribosomal subunit from RrmJ knock out E.coli strain

Experimental method

ELECTRON MICROSCOPY

Resolution

3.14 Å

Loop

Sequence

CUG*CG*CCUAAGGUAG*CGAAUG

Length

21 nucleotides

Bulged bases

7BV8|1|A|U|1971

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_7BV8_009 not in the Motif Atlas

Homologous match to J4_9DFE_008

Geometric discrepancy: 0.1594

The information below is about J4_9DFE_008

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_93343.1

Basepair signature

cWW-tSS-cSS-cWH-cWW-tWH-tHS-cWW-cWW-tWW-F-cSH-F-F

Number of instances in this motif group

4

Unit IDs

7BV8|1|A|C|1833
7BV8|1|A|U|1834
7BV8|1|A|G|1835
*
7BV8|1|A|C|1905
7BV8|1|A|G|1906
*
7BV8|1|A|C|1924
7BV8|1|A|C|1925
7BV8|1|A|U|1926
7BV8|1|A|A|1927
7BV8|1|A|A|1928
7BV8|1|A|G|1929
7BV8|1|A|G|1930
7BV8|1|A|U|1931
7BV8|1|A|A|1932
7BV8|1|A|G|1933
*
7BV8|1|A|C|1967
7BV8|1|A|G|1968
7BV8|1|A|A|1969
7BV8|1|A|A|1970
7BV8|1|A|U|1971
7BV8|1|A|G|1972

Current chains

Chain A

23S rRNA

Nearby chains

Chain C

50S ribosomal protein L2