Loop J4_7C7A

3D structure

PDB id: 7C7A (explore in PDB, NAKB, or RNA 3D Hub)
Description: Cryo-EM structure of yeast Ribonuclease MRP with substrate ITS1
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.8 Å

Loop

Sequence: CCA*UACUG*UAAACCAUAGUUAUGACGAUUG*UAACCCAAUG
Length: 40 nucleotides
Bulged bases: 7C7A|1|A|C|232, 7C7A|1|A|U|233, 7C7A|1|A|U|262, 7C7A|1|A|U|266, 7C7A|1|A|C|304
QA status: Valid loop

Sequence variability

R3DSVS

Structural variability across Equivalence Class

R3DMCS EC

Structural variability across Rfam

R3DMCS Rfam

Detailed Annotation: No text annotation
Broad Annotation: No text annotation
Motif group: Not in a motif group
Basepair signature: Not available
Number of instances in this motif group: 0

Unit IDs

7C7A|1|A|C|92
7C7A|1|A|C|93
7C7A|1|A|A|94
*
7C7A|1|A|U|230
7C7A|1|A|A|231
7C7A|1|A|C|232
7C7A|1|A|U|233
7C7A|1|A|G|234
*
7C7A|1|A|U|255
7C7A|1|A|A|256
7C7A|1|A|A|257
7C7A|1|A|A|258
7C7A|1|A|C|259
7C7A|1|A|C|260
7C7A|1|A|A|261
7C7A|1|A|U|262
7C7A|1|A|A|263
7C7A|1|A|G|264
7C7A|1|A|U|265
7C7A|1|A|U|266
7C7A|1|A|A|267
7C7A|1|A|U|268
7C7A|1|A|G|269
7C7A|1|A|A|270
7C7A|1|A|C|271
7C7A|1|A|G|272
7C7A|1|A|A|273
7C7A|1|A|U|274
7C7A|1|A|U|275
7C7A|1|A|G|276
*
7C7A|1|A|U|299
7C7A|1|A|A|300
7C7A|1|A|A|301
7C7A|1|A|C|302
7C7A|1|A|C|303
7C7A|1|A|C|304
7C7A|1|A|A|305
7C7A|1|A|A|306
7C7A|1|A|U|307
7C7A|1|A|G|308

Current chains

Chain A: Ribonuclease MRP RNA subunit NME1

Nearby chains

Chain B: Ribonucleases P/MRP protein subunit POP1
Chain D: RNases MRP/P 32.9 kDa subunit
Chain E: Ribonuclease P/MRP protein subunit POP5
Chain G: Ribonucleases P/MRP protein subunit POP7
Chain H: Ribonucleases P/MRP protein subunit POP8
Chain I: Ribonuclease P/MRP protein subunit RPP1
Chain J: Ribonuclease P/MRP protein subunit RPP1
Chain L: Ribonuclease MRP protein subunit RMP1
Chain R: Internal Transcribed Spacer 1

J4_7C7A_002