J4_7CPJ_001
3D structure
- PDB id
- 7CPJ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- ycbZ-stalled 70S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.3 Å
Loop
- Sequence
- UUGG*CAC*GGGGUCG*UA
- Length
- 16 nucleotides
- Bulged bases
- 7CPJ|1|9|U|8, 7CPJ|1|9|U|47, 7CPJ|1|9|C|48
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_7CPJ_001 not in the Motif Atlas
- Homologous match to J4_3AMU_002
- Geometric discrepancy: 0.2321
- The information below is about J4_3AMU_002
- Detailed Annotation
- tRNA junction
- Broad Annotation
- No text annotation
- Motif group
- J4_58311.1
- Basepair signature
- cWW-F-cWW-cWW-cHS-F-cWW-cWW
- Number of instances in this motif group
- 30
Unit IDs
7CPJ|1|9|U|7
7CPJ|1|9|U|8
7CPJ|1|9|G|9
7CPJ|1|9|G|10
*
7CPJ|1|9|C|25
7CPJ|1|9|A|26
7CPJ|1|9|C|27
*
7CPJ|1|9|G|43
7CPJ|1|9|G|44
7CPJ|1|9|G|45
7CPJ|1|9|G|46
7CPJ|1|9|U|47
7CPJ|1|9|C|48
7CPJ|1|9|G|49
*
7CPJ|1|9|U|65
7CPJ|1|9|A|66
Current chains
- Chain 9
- P/P tRNA
Nearby chains
- Chain A
- Large subunit ribosomal RNA; LSU rRNA
- Chain M
- 50S ribosomal protein L16
- Chain a
- Small subunit ribosomal RNA; SSU rRNA
- Chain m
- 30S ribosomal protein S13
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