J4_7CPV_003

3D structure

PDB id

7CPV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of 80S ribosome from mouse testis

Experimental method

ELECTRON MICROSCOPY

Resolution

3.03 Å

Loop

Sequence

CAAAUAU*AGG*CAUGUU*AG

Length

18 nucleotides

Bulged bases

7CPV|1|L5|A|2123, 7CPV|1|L5|U|2126, 7CPV|1|L5|U|2582

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

7CPV|1|L5|C|2122
7CPV|1|L5|A|2123
7CPV|1|L5|A|2124
7CPV|1|L5|A|2125
7CPV|1|L5|U|2126
7CPV|1|L5|A|2127
7CPV|1|L5|U|2128
*
7CPV|1|L5|A|2146
7CPV|1|L5|G|2147
7CPV|1|L5|G|2148
*
7CPV|1|L5|C|2578
7CPV|1|L5|A|2579
7CPV|1|L5|U|2580
7CPV|1|L5|G|2581
7CPV|1|L5|U|2582
7CPV|1|L5|U|2583
*
7CPV|1|L5|A|3513
7CPV|1|L5|G|3514

Current chains

Chain L5

Mus musculus 28S ribosomal RNA

Nearby chains

Chain LP

60S ribosomal protein L17

Chain LR

60S ribosomal protein L19

Chain Ld

60S ribosomal protein L31