J4_7CPV_006

3D structure

PDB id

7CPV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of 80S ribosome from mouse testis

Experimental method

ELECTRON MICROSCOPY

Resolution

3.03 Å

Loop

Sequence

GG*UGUGAA*UGGAAAG*UC

Length

17 nucleotides

Bulged bases

7CPV|1|L5|A|2450

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

7CPV|1|L5|G|2372
7CPV|1|L5|G|2373
*
7CPV|1|L5|U|2391
7CPV|1|L5|G|2392
7CPV|1|L5|U|2393
7CPV|1|L5|G|2394
7CPV|1|L5|A|2395
7CPV|1|L5|A|2396
*
7CPV|1|L5|U|2446
7CPV|1|L5|G|2447
7CPV|1|L5|G|2448
7CPV|1|L5|A|2449
7CPV|1|L5|A|2450
7CPV|1|L5|A|2451
7CPV|1|L5|G|2452
*
7CPV|1|L5|U|2472
7CPV|1|L5|C|2473

Current chains

Chain L5

Mus musculus 28S ribosomal RNA

Nearby chains

Chain LR

60S ribosomal protein L19

Chain LU

60S ribosomal protein L22

Chain Lg

60S ribosomal protein L34

Chain Lk

60S ribosomal protein L38