J4_7CPV_010
3D structure
- PDB id
- 7CPV (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of 80S ribosome from mouse testis
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.03 Å
Loop
- Sequence
- CUAAG*UUGAU*ACC*GGG
- Length
- 16 nucleotides
- Bulged bases
- 7CPV|1|L5|A|3887
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_7CPV_010 not in the Motif Atlas
- Homologous match to J4_8C3A_008
- Geometric discrepancy: 0.1707
- The information below is about J4_8C3A_008
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
7CPV|1|L5|C|3884
7CPV|1|L5|U|3885
7CPV|1|L5|A|3886
7CPV|1|L5|A|3887
7CPV|1|L5|G|3888
*
7CPV|1|L5|U|3942
7CPV|1|L5|U|3943
7CPV|1|L5|G|3944
7CPV|1|L5|A|3945
7CPV|1|L5|U|3946
*
7CPV|1|L5|A|3970
7CPV|1|L5|C|3971
7CPV|1|L5|C|3972
*
7CPV|1|L5|G|3981
7CPV|1|L5|G|3982
7CPV|1|L5|G|3983
Current chains
- Chain L5
- Mus musculus 28S ribosomal RNA
Nearby chains
- Chain LD
- 60S ribosomal protein L5
- Chain LT
- 60S ribosomal protein L21
- Chain Lb
- 60S ribosomal protein L29
- Chain Lo
- 60S ribosomal protein L36a
Coloring options: