J4_7D6Z_001

3D structure

PDB id

7D6Z (explore in PDB, NAKB, or RNA 3D Hub)

Description

Molecular model of the cryo-EM structure of 70S ribosome in complex with peptide deformylase and trigger factor

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

CC*GAGUAG*UGAAUAUGG*CCAAG

Length

22 nucleotides

Bulged bases

7D6Z|1|A|U|405

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

7D6Z|1|A|C|268
7D6Z|1|A|C|269
*
7D6Z|1|A|G|370
7D6Z|1|A|A|371
7D6Z|1|A|G|372
7D6Z|1|A|U|373
7D6Z|1|A|A|374
7D6Z|1|A|G|375
*
7D6Z|1|A|U|399
7D6Z|1|A|G|400
7D6Z|1|A|A|401
7D6Z|1|A|A|402
7D6Z|1|A|U|403
7D6Z|1|A|A|404
7D6Z|1|A|U|405
7D6Z|1|A|G|406
7D6Z|1|A|G|407
*
7D6Z|1|A|C|420
7D6Z|1|A|C|421
7D6Z|1|A|A|422
7D6Z|1|A|A|423
7D6Z|1|A|G|424

Current chains

Chain A

23S ribosomal rRNA

Nearby chains

Chain H

50S ribosomal protein L9

Chain X

50S ribosomal protein L28