J4_7D6Z_002

3D structure

PDB id

7D6Z (explore in PDB, NAKB, or RNA 3D Hub)

Description

Molecular model of the cryo-EM structure of 70S ribosome in complex with peptide deformylase and trigger factor

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

GGAAG*CGCG*CAG*CGUAC

Length

17 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_7D6Z_002 not in the Motif Atlas

Homologous match to J4_5J7L_019

Geometric discrepancy: 0.0657

The information below is about J4_5J7L_019

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_71729.5

Basepair signature

cWW-tSH-cHH-F-F-tHS-cWW-cWW-F-F-cWW

Number of instances in this motif group

4

Unit IDs

7D6Z|1|A|G|297
7D6Z|1|A|G|298
7D6Z|1|A|A|299
7D6Z|1|A|A|300
7D6Z|1|A|G|301
*
7D6Z|1|A|C|316
7D6Z|1|A|G|317
7D6Z|1|A|C|318
7D6Z|1|A|G|319
*
7D6Z|1|A|C|323
7D6Z|1|A|A|324
7D6Z|1|A|G|325
*
7D6Z|1|A|C|337
7D6Z|1|A|G|338
7D6Z|1|A|U|339
7D6Z|1|A|A|340
7D6Z|1|A|C|341

Current chains

Chain A

23S ribosomal rRNA

Nearby chains

Chain E

50S ribosomal protein L4

Chain U

50S ribosomal protein L24