J4_7D6Z_003

3D structure

PDB id

7D6Z (explore in PDB, NAKB, or RNA 3D Hub)

Description

Molecular model of the cryo-EM structure of 70S ribosome in complex with peptide deformylase and trigger factor

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

CAAG*CGAAG*CGAG*CGUUAAG

Length

20 nucleotides

Bulged bases

7D6Z|1|A|A|654

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_7D6Z_003 not in the Motif Atlas

Homologous match to J4_5J7L_020

Geometric discrepancy: 0.2012

The information below is about J4_5J7L_020

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_60168.1

Basepair signature

cWW-F-F-F-F-F-cWW-F-F-F-cWW-F-tSS-F-cWW

Number of instances in this motif group

2

Unit IDs

7D6Z|1|A|C|601
7D6Z|1|A|A|602
7D6Z|1|A|A|603
7D6Z|1|A|G|604
*
7D6Z|1|A|C|624
7D6Z|1|A|G|625
7D6Z|1|A|A|626
7D6Z|1|A|A|627
7D6Z|1|A|G|628
*
7D6Z|1|A|C|635
7D6Z|1|A|G|636
7D6Z|1|A|A|637
7D6Z|1|A|G|638
*
7D6Z|1|A|C|650
7D6Z|1|A|G|651
7D6Z|1|A|U|652
7D6Z|1|A|U|653
7D6Z|1|A|A|654
7D6Z|1|A|A|655
7D6Z|1|A|G|656

Current chains

Chain A

23S ribosomal rRNA

Nearby chains

Chain E

50S ribosomal protein L4

Chain L

50S ribosomal protein L15

Chain d

50S ribosomal protein L35