J4_7D6Z_005

3D structure

PDB id

7D6Z (explore in PDB, NAKB, or RNA 3D Hub)

Description

Molecular model of the cryo-EM structure of 70S ribosome in complex with peptide deformylase and trigger factor

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

GGUUC*GGUGAG*CU*AAUCGUAC

Length

21 nucleotides

Bulged bases

7D6Z|1|A|G|1341

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_7D6Z_005 not in the Motif Atlas

Homologous match to J4_5J7L_022

Geometric discrepancy: 0.0911

The information below is about J4_5J7L_022

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_69051.6

Basepair signature

cWW-F-cWW-F-tHW-F-cWW-F-F-F-F-F-cWW-cWW

Number of instances in this motif group

7

Unit IDs

7D6Z|1|A|G|1310
7D6Z|1|A|G|1311
7D6Z|1|A|U|1312
7D6Z|1|A|U|1313
7D6Z|1|A|C|1314
*
7D6Z|1|A|G|1338
7D6Z|1|A|G|1339
7D6Z|1|A|U|1340
7D6Z|1|A|G|1341
7D6Z|1|A|A|1342
7D6Z|1|A|G|1343
*
7D6Z|1|A|C|1404
7D6Z|1|A|U|1405
*
7D6Z|1|A|A|1597
7D6Z|1|A|A|1598
7D6Z|1|A|U|1599
7D6Z|1|A|C|1600
7D6Z|1|A|G|1601
7D6Z|1|A|U|1602
7D6Z|1|A|A|1603
7D6Z|1|A|C|1604

Current chains

Chain A

23S ribosomal rRNA

Nearby chains

Chain Z

50S ribosomal protein L23

Chain c

50S ribosomal protein L34

Chain h

Trigger factor