J4_7D6Z_009

3D structure

PDB id

7D6Z (explore in PDB, NAKB, or RNA 3D Hub)

Description

Molecular model of the cryo-EM structure of 70S ribosome in complex with peptide deformylase and trigger factor

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

CUG*CG*CCUAAGGUAG*CGAAUG

Length

21 nucleotides

Bulged bases

7D6Z|1|A|U|1971

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_7D6Z_009 not in the Motif Atlas

Homologous match to J4_9DFE_008

Geometric discrepancy: 0.108

The information below is about J4_9DFE_008

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_42306.1

Basepair signature

cWW-tSS-cSS-cWH-cWW-tWH-tHS-cWW-cWW-tWW-F-cSH-F-F

Number of instances in this motif group

5

Unit IDs

7D6Z|1|A|C|1833
7D6Z|1|A|U|1834
7D6Z|1|A|G|1835
*
7D6Z|1|A|C|1905
7D6Z|1|A|G|1906
*
7D6Z|1|A|C|1924
7D6Z|1|A|C|1925
7D6Z|1|A|U|1926
7D6Z|1|A|A|1927
7D6Z|1|A|A|1928
7D6Z|1|A|G|1929
7D6Z|1|A|G|1930
7D6Z|1|A|U|1931
7D6Z|1|A|A|1932
7D6Z|1|A|G|1933
*
7D6Z|1|A|C|1967
7D6Z|1|A|G|1968
7D6Z|1|A|A|1969
7D6Z|1|A|A|1970
7D6Z|1|A|U|1971
7D6Z|1|A|G|1972

Current chains

Chain A

23S ribosomal rRNA

Nearby chains

Chain 3

Transfer RNA; tRNA

Chain C

50S ribosomal protein L2

Chain f

Small subunit ribosomal RNA; SSU rRNA