J4_7D6Z_010

3D structure

PDB id

7D6Z (explore in PDB, NAKB, or RNA 3D Hub)

Description

Molecular model of the cryo-EM structure of 70S ribosome in complex with peptide deformylase and trigger factor

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

CGAAG*UUGACU*AGGU*AGG

Length

18 nucleotides

Bulged bases

7D6Z|1|A|A|2288

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

7D6Z|1|A|C|2285
7D6Z|1|A|G|2286
7D6Z|1|A|A|2287
7D6Z|1|A|A|2288
7D6Z|1|A|G|2289
*
7D6Z|1|A|U|2343
7D6Z|1|A|U|2344
7D6Z|1|A|G|2345
7D6Z|1|A|A|2346
7D6Z|1|A|C|2347
7D6Z|1|A|U|2348
*
7D6Z|1|A|A|2369
7D6Z|1|A|G|2370
7D6Z|1|A|G|2371
7D6Z|1|A|U|2372
*
7D6Z|1|A|A|2381
7D6Z|1|A|G|2382
7D6Z|1|A|G|2383

Current chains

Chain A

23S ribosomal rRNA

Nearby chains

Chain O

50S ribosomal protein L18

Chain W

50S ribosomal protein L27

Chain b

50S ribosomal protein L33

Chain d

50S ribosomal protein L35