J4_7D6Z_012

3D structure

PDB id

7D6Z (explore in PDB, NAKB, or RNA 3D Hub)

Description

Molecular model of the cryo-EM structure of 70S ribosome in complex with peptide deformylase and trigger factor

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

UGAGUAAUG*UG*CUAG*CCA

Length

18 nucleotides

Bulged bases

7D6Z|1|f|U|121

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

7D6Z|1|f|U|114
7D6Z|1|f|G|115
7D6Z|1|f|A|116
7D6Z|1|f|G|117
7D6Z|1|f|U|118
7D6Z|1|f|A|119
7D6Z|1|f|A|120
7D6Z|1|f|U|121
7D6Z|1|f|G|122
*
7D6Z|1|f|U|239
7D6Z|1|f|G|240
*
7D6Z|1|f|C|286
7D6Z|1|f|U|287
7D6Z|1|f|A|288
7D6Z|1|f|G|289
*
7D6Z|1|f|C|311
7D6Z|1|f|C|312
7D6Z|1|f|A|313

Current chains

Chain f

16S ribosomal rRNA

Nearby chains

Chain s

30S ribosomal protein S12

Chain w

30S ribosomal protein S16

Chain x

30S ribosomal protein S17