J4_7DUJ_002

3D structure

PDB id

7DUJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus (HB8) 30S ribosomal subunit with mRNA and cognate transfer RNA anticodon stem-loop and sisomicin derivative N1,3''Bz bound

Experimental method

X-RAY DIFFRACTION

Resolution

3.75 Å

Loop

Sequence

GAGG*CCAUGUG*CAAAG*CGC

Length

19 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

7DUJ|1|A|G|142
7DUJ|1|A|A|143
7DUJ|1|A|G|144
7DUJ|1|A|G|145
*
7DUJ|1|A|C|177
7DUJ|1|A|C|178
7DUJ|1|A|A|179
7DUJ|1|A|U|180
7DUJ|1|A|G|181
7DUJ|1|A|U|182
7DUJ|1|A|G|183
*
7DUJ|1|A|C|194
7DUJ|1|A|A|195
7DUJ|1|A|A|196
7DUJ|1|A|A|197
7DUJ|1|A|G|198
*
7DUJ|1|A|C|219
7DUJ|1|A|G|220
7DUJ|1|A|C|221

Current chains

Chain A

30S Ribosomal RNA rRNA

Nearby chains

Chain T

30S ribosomal protein S20