J4_7F5S_009

3D structure

PDB id

7F5S (explore in PDB, NAKB, or RNA 3D Hub)

Description

human delta-METTL18 60S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.72 Å

Loop

Sequence

CUG*CG*CUUAAGGUAG*UGAA(UY1)G

Length

21 nucleotides

Bulged bases

7F5S|1|L5|UY1|3818

QA status

Modified nucleotides: UY1

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_7F5S_009 not in the Motif Atlas

Homologous match to J4_8C3A_007

Geometric discrepancy: 0.1081

The information below is about J4_8C3A_007

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

7F5S|1|L5|C|3696
7F5S|1|L5|U|3697
7F5S|1|L5|G|3698
*
7F5S|1|L5|C|3752
7F5S|1|L5|G|3753
*
7F5S|1|L5|C|3771
7F5S|1|L5|U|3772
7F5S|1|L5|U|3773
7F5S|1|L5|A|3774
7F5S|1|L5|A|3775
7F5S|1|L5|G|3776
7F5S|1|L5|G|3777
7F5S|1|L5|U|3778
7F5S|1|L5|A|3779
7F5S|1|L5|G|3780
*
7F5S|1|L5|U|3814
7F5S|1|L5|G|3815
7F5S|1|L5|A|3816
7F5S|1|L5|A|3817
7F5S|1|L5|UY1|3818
7F5S|1|L5|G|3819

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LA

60S ribosomal protein L8

Chain Ln

60S ribosomal protein L41