J4_7JQC_001

3D structure

PDB id

7JQC (explore in PDB, NAKB, or RNA 3D Hub)

Description

SARS-CoV-2 Nsp1, CrPV IRES and rabbit 40S ribosome complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

CUCAUUAAAUC*GCC*GUGAC*GGAG

Length

23 nucleotides

Bulged bases

7JQC|1|A|G|407

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

7JQC|1|A|C|96
7JQC|1|A|U|97
7JQC|1|A|C|98
7JQC|1|A|A|99
7JQC|1|A|U|100
7JQC|1|A|U|101
7JQC|1|A|A|102
7JQC|1|A|A|103
7JQC|1|A|A|104
7JQC|1|A|U|105
7JQC|1|A|C|106
*
7JQC|1|A|G|355
7JQC|1|A|C|356
7JQC|1|A|C|357
*
7JQC|1|A|G|405
7JQC|1|A|U|406
7JQC|1|A|G|407
7JQC|1|A|A|408
7JQC|1|A|C|409
*
7JQC|1|A|G|431
7JQC|1|A|G|432
7JQC|1|A|A|433
7JQC|1|A|G|434

Current chains

Chain A

rRNA

Nearby chains

Chain J

eS8

Chain K

uS4

Chain M

40S ribosomal protein S4

Chain O

uS17

Chain c

Uncharacterized protein