J4_7JQC_003
3D structure
- PDB id
- 7JQC (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- SARS-CoV-2 Nsp1, CrPV IRES and rabbit 40S ribosome complex
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.3 Å
Loop
- Sequence
- CCAGGAGUGGAGCCUGCGGCUUAAUUUGACUCAACACGGGAAACCUCACC*GGCUGCACGCGCGCUAC*GGAAUUCCCAGUAA*UGAUUAAG
- Length
- 89 nucleotides
- Bulged bases
- 7JQC|1|A|A|1240, 7JQC|1|A|A|1241, 7JQC|1|A|A|1253, 7JQC|1|A|G|1256, 7JQC|1|A|A|1258, 7JQC|1|A|A|1259
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
7JQC|1|A|C|1218
7JQC|1|A|C|1219
7JQC|1|A|A|1220
7JQC|1|A|G|1221
7JQC|1|A|G|1222
7JQC|1|A|A|1223
7JQC|1|A|G|1224
7JQC|1|A|U|1225
7JQC|1|A|G|1226
7JQC|1|A|G|1227
7JQC|1|A|A|1228
7JQC|1|A|G|1229
7JQC|1|A|C|1230
7JQC|1|A|C|1231
7JQC|1|A|U|1232
7JQC|1|A|G|1233
7JQC|1|A|C|1234
7JQC|1|A|G|1235
7JQC|1|A|G|1236
7JQC|1|A|C|1237
7JQC|1|A|U|1238
7JQC|1|A|U|1239
7JQC|1|A|A|1240
7JQC|1|A|A|1241
7JQC|1|A|U|1242
7JQC|1|A|U|1243
7JQC|1|A|U|1244
7JQC|1|A|G|1245
7JQC|1|A|A|1246
7JQC|1|A|C|1247
7JQC|1|A|U|1248
7JQC|1|A|C|1249
7JQC|1|A|A|1250
7JQC|1|A|A|1251
7JQC|1|A|C|1252
7JQC|1|A|A|1253
7JQC|1|A|C|1254
7JQC|1|A|G|1255
7JQC|1|A|G|1256
7JQC|1|A|G|1257
7JQC|1|A|A|1258
7JQC|1|A|A|1259
7JQC|1|A|A|1260
7JQC|1|A|C|1261
7JQC|1|A|C|1262
7JQC|1|A|U|1263
7JQC|1|A|C|1264
7JQC|1|A|A|1265
7JQC|1|A|C|1266
7JQC|1|A|C|1267
*
7JQC|1|A|G|1516
7JQC|1|A|G|1517
7JQC|1|A|C|1518
7JQC|1|A|U|1519
7JQC|1|A|G|1520
7JQC|1|A|C|1521
7JQC|1|A|A|1522
7JQC|1|A|C|1523
7JQC|1|A|G|1524
7JQC|1|A|C|1525
7JQC|1|A|G|1526
7JQC|1|A|C|1527
7JQC|1|A|G|1528
7JQC|1|A|C|1529
7JQC|1|A|U|1530
7JQC|1|A|A|1531
7JQC|1|A|C|1532
*
7JQC|1|A|G|1638
7JQC|1|A|G|1639
7JQC|1|A|A|1640
7JQC|1|A|A|1641
7JQC|1|A|U|1642
7JQC|1|A|U|1643
7JQC|1|A|C|1644
7JQC|1|A|C|1645
7JQC|1|A|C|1646
7JQC|1|A|A|1647
7JQC|1|A|G|1648
7JQC|1|A|U|1649
7JQC|1|A|A|1650
7JQC|1|A|A|1651
*
7JQC|1|A|U|1673
7JQC|1|A|G|1674
7JQC|1|A|A|1675
7JQC|1|A|U|1676
7JQC|1|A|U|1677
7JQC|1|A|A|1678
7JQC|1|A|A|1679
7JQC|1|A|G|1680
Current chains
- Chain A
- rRNA
Nearby chains
- Chain G
- uS7
- Chain L
- S10_plectin domain-containing protein
- Chain Q
- uS19
- Chain R
- Uncharacterized protein
- Chain T
- uS13
- Chain U
- Uncharacterized protein
- Chain V
- uS10
- Chain d
- eS28
- Chain g
- eS31
Coloring options: