J4_7JQL_016

3D structure

PDB id

7JQL (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with Bac7-001, mRNA, and deacylated P-site tRNA at 3.00A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

CGAAG*CGCC*GAG*CGUAG

Length

17 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_7JQL_016 not in the Motif Atlas

Homologous match to J4_9DFE_002

Geometric discrepancy: 0.0822

The information below is about J4_9DFE_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_71729.5

Basepair signature

cWW-tSH-cHH-F-F-tHS-cWW-cWW-F-F-cWW

Number of instances in this motif group

4

Unit IDs

7JQL|1|2A|C|297
7JQL|1|2A|G|298
7JQL|1|2A|A|299
7JQL|1|2A|A|300
7JQL|1|2A|G|301
*
7JQL|1|2A|C|316
7JQL|1|2A|G|317
7JQL|1|2A|C|318
7JQL|1|2A|C|319
*
7JQL|1|2A|G|323
7JQL|1|2A|A|324
7JQL|1|2A|G|325
*
7JQL|1|2A|C|337
7JQL|1|2A|G|338
7JQL|1|2A|U|339
7JQL|1|2A|A|340
7JQL|1|2A|G|341

Current chains

Chain 2A

23S Ribosomal RNA

Nearby chains

Chain 2F

50S ribosomal protein L4

Chain 2Y

50S ribosomal protein L24