J4_7JQL_028
3D structure
- PDB id
- 7JQL (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the Thermus thermophilus 70S ribosome in complex with Bac7-001, mRNA, and deacylated P-site tRNA at 3.00A resolution
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3 Å
Loop
- Sequence
- G(4SU)GG*CGUC*GAAGGUCG*CC
- Length
- 18 nucleotides
- Bulged bases
- 7JQL|1|2x|4SU|8, 7JQL|1|2x|U|47, 7JQL|1|2x|C|48
- QA status
- Modified nucleotides: 4SU
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_7JQL_028 not in the Motif Atlas
- Homologous match to J4_7E8O_001
- Geometric discrepancy: 0.2713
- The information below is about J4_7E8O_001
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
7JQL|1|2x|G|7
7JQL|1|2x|4SU|8
7JQL|1|2x|G|9
7JQL|1|2x|G|10
*
7JQL|1|2x|C|25
7JQL|1|2x|G|26
7JQL|1|2x|U|27
7JQL|1|2x|C|28
*
7JQL|1|2x|G|42
7JQL|1|2x|A|43
7JQL|1|2x|A|44
7JQL|1|2x|G|45
7JQL|1|2x|G|46
7JQL|1|2x|U|47
7JQL|1|2x|C|48
7JQL|1|2x|G|49
*
7JQL|1|2x|C|65
7JQL|1|2x|C|66
Current chains
- Chain 2x
- P-site tRNA
Nearby chains
- Chain 2A
- Large subunit ribosomal RNA; LSU rRNA
- Chain 2Q
- 50S ribosomal protein L16
- Chain 2a
- Small subunit ribosomal RNA; SSU rRNA
- Chain 2m
- 30S ribosomal protein S13
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