J4_7JQM_007

3D structure

PDB id

7JQM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with Bac7-002, mRNA, and deacylated P-site tRNA at 3.05A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

3.05 Å

Loop

Sequence

GACUG*CACAG*CGAC*GUAAC

Length

19 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_7JQM_007 not in the Motif Atlas

Homologous match to J4_9DFE_007

Geometric discrepancy: 0.0518

The information below is about J4_9DFE_007

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_61477.6

Basepair signature

cWW-tSW-F-tHS-tHS-F-cWW-cWW-F-tHS-cWW

Number of instances in this motif group

4

Unit IDs

7JQM|1|1A|G|1772
7JQM|1|1A|A|1773
7JQM|1|1A|C|1774
7JQM|1|1A|U|1775
7JQM|1|1A|G|1776
*
7JQM|1|1A|C|1788
7JQM|1|1A|A|1789
7JQM|1|1A|C|1790
7JQM|1|1A|A|1791
7JQM|1|1A|G|1792
*
7JQM|1|1A|C|1827
7JQM|1|1A|G|1828
7JQM|1|1A|A|1829
7JQM|1|1A|C|1830
*
7JQM|1|1A|G|1975
7JQM|1|1A|U|1976
7JQM|1|1A|A|1977
7JQM|1|1A|A|1978
7JQM|1|1A|C|1979

Current chains

Chain 1A

23S Ribosomal RNA

Nearby chains

Chain 1D

50S ribosomal protein L2

Chain 1a

Small subunit ribosomal RNA; SSU rRNA