J4_7JQM_014
3D structure
- PDB id
- 7JQM (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the Thermus thermophilus 70S ribosome in complex with Bac7-002, mRNA, and deacylated P-site tRNA at 3.05A resolution
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.05 Å
Loop
- Sequence
- G(4SU)GG*CGU*AAGGUCG*CC
- Length
- 16 nucleotides
- Bulged bases
- 7JQM|1|1x|4SU|8, 7JQM|1|1x|U|47, 7JQM|1|1x|C|48
- QA status
- Modified nucleotides: 4SU
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_7JQM_014 not in the Motif Atlas
- Homologous match to J4_6CFJ_015
- Geometric discrepancy: 0.1198
- The information below is about J4_6CFJ_015
- Detailed Annotation
- tRNA junction
- Broad Annotation
- No text annotation
- Motif group
- J4_95067.1
- Basepair signature
- cWW-F-cWW-cWW-cHS-F-cWW-cWW
- Number of instances in this motif group
- 48
Unit IDs
7JQM|1|1x|G|7
7JQM|1|1x|4SU|8
7JQM|1|1x|G|9
7JQM|1|1x|G|10
*
7JQM|1|1x|C|25
7JQM|1|1x|G|26
7JQM|1|1x|U|27
*
7JQM|1|1x|A|43
7JQM|1|1x|A|44
7JQM|1|1x|G|45
7JQM|1|1x|G|46
7JQM|1|1x|U|47
7JQM|1|1x|C|48
7JQM|1|1x|G|49
*
7JQM|1|1x|C|65
7JQM|1|1x|C|66
Current chains
- Chain 1x
- P-site tRNA
Nearby chains
- Chain 10
- 50S ribosomal protein L27
- Chain 1A
- Large subunit ribosomal RNA; LSU rRNA
- Chain 1Q
- 50S ribosomal protein L16
- Chain 1a
- Small subunit ribosomal RNA; SSU rRNA
- Chain 1m
- 30S ribosomal protein S13
Coloring options: