J4_7JQM_016

3D structure

PDB id

7JQM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with Bac7-002, mRNA, and deacylated P-site tRNA at 3.05A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

3.05 Å

Loop

Sequence

CGAAG*CGCC*GAG*CGUAG

Length

17 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_7JQM_016 not in the Motif Atlas

Homologous match to J4_9DFE_002

Geometric discrepancy: 0.0887

The information below is about J4_9DFE_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_16174.1

Basepair signature

cWW-tSH-cHH-F-F-tHS-cWW-cWW-F-F-cWW

Number of instances in this motif group

5

Unit IDs

7JQM|1|2A|C|297
7JQM|1|2A|G|298
7JQM|1|2A|A|299
7JQM|1|2A|A|300
7JQM|1|2A|G|301
*
7JQM|1|2A|C|316
7JQM|1|2A|G|317
7JQM|1|2A|C|318
7JQM|1|2A|C|319
*
7JQM|1|2A|G|323
7JQM|1|2A|A|324
7JQM|1|2A|G|325
*
7JQM|1|2A|C|337
7JQM|1|2A|G|338
7JQM|1|2A|U|339
7JQM|1|2A|A|340
7JQM|1|2A|G|341

Current chains

Chain 2A

23S Ribosomal RNA

Nearby chains

Chain 2F

50S ribosomal protein L4

Chain 2Y

50S ribosomal protein L24