3D structure

PDB id
7JSZ (explore in PDB, NAKB, or RNA 3D Hub)
Description
ArfB Rescue of a 70S Ribosome stalled on truncated mRNA with a partial A-site codon (+2-IV)
Experimental method
ELECTRON MICROSCOPY
Resolution
3.7 Å

Loop

Sequence
CAAG*CGAAG*CGAG*CGUUAAG
Length
20 nucleotides
Bulged bases
7JSZ|1|1|A|654
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J4_7JSZ_002 not in the Motif Atlas
Homologous match to J4_5J7L_020
Geometric discrepancy: 0.2892
The information below is about J4_5J7L_020
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J4_60168.1
Basepair signature
cWW-F-F-F-F-F-cWW-F-F-F-cWW-F-tSS-F-cWW
Number of instances in this motif group
2

Unit IDs

7JSZ|1|1|C|601
7JSZ|1|1|A|602
7JSZ|1|1|A|603
7JSZ|1|1|G|604
*
7JSZ|1|1|C|624
7JSZ|1|1|G|625
7JSZ|1|1|A|626
7JSZ|1|1|A|627
7JSZ|1|1|G|628
*
7JSZ|1|1|C|635
7JSZ|1|1|G|636
7JSZ|1|1|A|637
7JSZ|1|1|G|638
*
7JSZ|1|1|C|650
7JSZ|1|1|G|651
7JSZ|1|1|U|652
7JSZ|1|1|U|653
7JSZ|1|1|A|654
7JSZ|1|1|A|655
7JSZ|1|1|G|656

Current chains

Chain 1
23S ribosomal RNA

Nearby chains

Chain E
50S ribosomal protein L35
Chain d
50S ribosomal protein L4
Chain l
50S ribosomal protein L15

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