J4_7JT1_004

3D structure

PDB id

7JT1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome stalled on long mRNA with ArfB-1 and ArfB-2 bound (+9-III)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

GGUUC*GGUGAG*CU*AAUCGUAC

Length

21 nucleotides

Bulged bases

7JT1|1|1|G|1341

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_7JT1_004 not in the Motif Atlas

Homologous match to J4_5J7L_022

Geometric discrepancy: 0.0987

The information below is about J4_5J7L_022

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_69051.6

Basepair signature

cWW-F-cWW-F-tHW-F-cWW-F-F-F-F-F-cWW-cWW

Number of instances in this motif group

7

Unit IDs

7JT1|1|1|G|1310
7JT1|1|1|G|1311
7JT1|1|1|U|1312
7JT1|1|1|U|1313
7JT1|1|1|C|1314
*
7JT1|1|1|G|1338
7JT1|1|1|G|1339
7JT1|1|1|U|1340
7JT1|1|1|G|1341
7JT1|1|1|A|1342
7JT1|1|1|G|1343
*
7JT1|1|1|C|1404
7JT1|1|1|U|1405
*
7JT1|1|1|A|1597
7JT1|1|1|A|1598
7JT1|1|1|U|1599
7JT1|1|1|C|1600
7JT1|1|1|G|1601
7JT1|1|1|U|1602
7JT1|1|1|A|1603
7JT1|1|1|C|1604

Current chains

Chain 1

23S ribosomal RNA

Nearby chains

Chain D

50S ribosomal protein L34

Chain t

50S ribosomal protein L23