J4_7K00_007

3D structure

PDB id

7K00 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Bacterial Ribosome at 2 Angstrom Resolution

Experimental method

ELECTRON MICROSCOPY

Resolution

1.98 Å

Loop

Sequence

GGAAG*CGCG*CAG*CGUAC

Length

17 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_7K00_007 not in the Motif Atlas

Homologous match to J4_5J7L_019

Geometric discrepancy: 0.0548

The information below is about J4_5J7L_019

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_71729.5

Basepair signature

cWW-tSH-cHH-F-F-tHS-cWW-cWW-F-F-cWW

Number of instances in this motif group

4

Unit IDs

7K00|1|a|G|297
7K00|1|a|G|298
7K00|1|a|A|299
7K00|1|a|A|300
7K00|1|a|G|301
*
7K00|1|a|C|316
7K00|1|a|G|317
7K00|1|a|C|318
7K00|1|a|G|319
*
7K00|1|a|C|323
7K00|1|a|A|324
7K00|1|a|G|325
*
7K00|1|a|C|337
7K00|1|a|G|338
7K00|1|a|U|339
7K00|1|a|A|340
7K00|1|a|C|341

Current chains

Chain a

23S rRNA

Nearby chains

Chain e

50S ribosomal protein L4

Chain t

50S ribosomal protein L24