J4_7K52_004

3D structure

PDB id

7K52 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Near post-translocated non-frameshifting(CCA-A) complex with EF-G and GDPCP (Structure III)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

GGUUC*GGUGAG*CU*AAUCGUAC

Length

21 nucleotides

Bulged bases

7K52|1|1|G|1341

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_7K52_004 not in the Motif Atlas

Homologous match to J4_5J7L_022

Geometric discrepancy: 0.103

The information below is about J4_5J7L_022

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_69051.6

Basepair signature

cWW-F-cWW-F-tHW-F-cWW-F-F-F-F-F-cWW-cWW

Number of instances in this motif group

7

Unit IDs

7K52|1|1|G|1310
7K52|1|1|G|1311
7K52|1|1|U|1312
7K52|1|1|U|1313
7K52|1|1|C|1314
*
7K52|1|1|G|1338
7K52|1|1|G|1339
7K52|1|1|U|1340
7K52|1|1|G|1341
7K52|1|1|A|1342
7K52|1|1|G|1343
*
7K52|1|1|C|1404
7K52|1|1|U|1405
*
7K52|1|1|A|1597
7K52|1|1|A|1598
7K52|1|1|U|1599
7K52|1|1|C|1600
7K52|1|1|G|1601
7K52|1|1|U|1602
7K52|1|1|A|1603
7K52|1|1|C|1604

Current chains

Chain 1

23S ribosomal RNA

Nearby chains

Chain D

50S ribosomal protein L34

Chain t

50S ribosomal protein L23