J4_7K52_014

3D structure

PDB id

7K52 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Near post-translocated non-frameshifting(CCA-A) complex with EF-G and GDPCP (Structure III)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

GUAG*CAA*UGGGUCG*UC

Length

16 nucleotides

Bulged bases

7K52|1|5|U|8, 7K52|1|5|U|47, 7K52|1|5|C|48

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_7K52_014 not in the Motif Atlas

Homologous match to J4_7VNV_001

Geometric discrepancy: 0.2227

The information below is about J4_7VNV_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_70449.29

Basepair signature

cWW-F-cWW-cWW-cHS-F-cWW-cWW

Number of instances in this motif group

54

Unit IDs

7K52|1|5|G|7
7K52|1|5|U|8
7K52|1|5|A|9
7K52|1|5|G|10
*
7K52|1|5|C|25
7K52|1|5|A|26
7K52|1|5|A|27
*
7K52|1|5|U|43
7K52|1|5|G|44
7K52|1|5|G|45
7K52|1|5|G|46
7K52|1|5|U|47
7K52|1|5|C|48
7K52|1|5|G|49
*
7K52|1|5|U|65
7K52|1|5|C|66

Current chains

Chain 5

tRNAPro

Nearby chains

Chain 1

Large subunit ribosomal RNA; LSU rRNA

Chain 8

Elongation factor G

Chain R

30S ribosomal protein S13

Chain m

50S ribosomal protein L16