J4_7K54_008

3D structure

PDB id

7K54 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mid-translocated +1-frameshifting(CCC-A) complex with EF-G and GDPCP (Structure II-FS)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

CUG*CG*CCUAAGGUAG*CGAAUG

Length

21 nucleotides

Bulged bases

7K54|1|1|U|1971

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_7K54_008 not in the Motif Atlas

Homologous match to J4_9DFE_008

Geometric discrepancy: 0.1194

The information below is about J4_9DFE_008

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_93343.1

Basepair signature

cWW-tSS-cSS-cWH-cWW-tWH-tHS-cWW-cWW-tWW-F-cSH-F-F

Number of instances in this motif group

4

Unit IDs

7K54|1|1|C|1833
7K54|1|1|U|1834
7K54|1|1|G|1835
*
7K54|1|1|C|1905
7K54|1|1|G|1906
*
7K54|1|1|C|1924
7K54|1|1|C|1925
7K54|1|1|U|1926
7K54|1|1|A|1927
7K54|1|1|A|1928
7K54|1|1|G|1929
7K54|1|1|G|1930
7K54|1|1|U|1931
7K54|1|1|A|1932
7K54|1|1|G|1933
*
7K54|1|1|C|1967
7K54|1|1|G|1968
7K54|1|1|A|1969
7K54|1|1|A|1970
7K54|1|1|U|1971
7K54|1|1|G|1972

Current chains

Chain 1

23S ribosomal RNA

Nearby chains

Chain 3

Small subunit ribosomal RNA; SSU rRNA

Chain 5

Transfer RNA; tRNA

Chain b

50S ribosomal protein L2