3D structure

PDB id
7K54 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Mid-translocated +1-frameshifting(CCC-A) complex with EF-G and GDPCP (Structure II-FS)
Experimental method
ELECTRON MICROSCOPY
Resolution
3.2 Å

Loop

Sequence
GCG*CGAAAG*CCGUAAACGAUG*CC
Length
23 nucleotides
Bulged bases
7K54|1|3|C|576, 7K54|1|3|A|815
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J4_7K54_013 not in the Motif Atlas
Homologous match to J4_5J7L_003
Geometric discrepancy: 0.0874
The information below is about J4_5J7L_003
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J4_61885.6
Basepair signature
cWW-cWW-cWW-F-F-tHW-F-F-F-F-F-cWW-F-F
Number of instances in this motif group
4

Unit IDs

7K54|1|3|G|575
7K54|1|3|C|576
7K54|1|3|G|577
*
7K54|1|3|C|764
7K54|1|3|G|765
7K54|1|3|A|766
7K54|1|3|A|767
7K54|1|3|A|768
7K54|1|3|G|769
*
7K54|1|3|C|810
7K54|1|3|C|811
7K54|1|3|G|812
7K54|1|3|U|813
7K54|1|3|A|814
7K54|1|3|A|815
7K54|1|3|A|816
7K54|1|3|C|817
7K54|1|3|G|818
7K54|1|3|A|819
7K54|1|3|U|820
7K54|1|3|G|821
*
7K54|1|3|C|879
7K54|1|3|C|880

Current chains

Chain 3
16S ribosomal RNA

Nearby chains

Chain 1
Large subunit ribosomal RNA; LSU rRNA
Chain M
30S ribosomal protein S8
Chain Q
30S ribosomal protein S12
Chain T
30S ribosomal protein S15
Chain V
30S ribosomal protein S17
Chain Z
30S ribosomal protein S21

Coloring options:


Copyright 2025 BGSU RNA group. Page generated in 0.3763 s