J4_7KGB_002

3D structure

PDB id

7KGB (explore in PDB, NAKB, or RNA 3D Hub)

Description

CryoEM structure of A2296-methylated Mycobacterium tuberculosis ribosome bound with SEQ-9

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

GGAAG*UGCC*GAC*GGUAC

Length

17 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_7KGB_002 not in the Motif Atlas

Homologous match to J4_4WF9_002

Geometric discrepancy: 0.1296

The information below is about J4_4WF9_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_16174.1

Basepair signature

cWW-tSH-cHH-F-F-tHS-cWW-cWW-F-F-cWW

Number of instances in this motif group

5

Unit IDs

7KGB|1|A|G|379
7KGB|1|A|G|380
7KGB|1|A|A|381
7KGB|1|A|A|382
7KGB|1|A|G|383
*
7KGB|1|A|U|399
7KGB|1|A|G|400
7KGB|1|A|C|401
7KGB|1|A|C|402
*
7KGB|1|A|G|406
7KGB|1|A|A|407
7KGB|1|A|C|408
*
7KGB|1|A|G|420
7KGB|1|A|G|421
7KGB|1|A|U|422
7KGB|1|A|A|423
7KGB|1|A|C|424

Current chains

Chain A

23S rRNA

Nearby chains

Chain E

50S ribosomal protein L4

Chain U

50S ribosomal protein L24