J4_7KGB_007
3D structure
- PDB id
- 7KGB (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- CryoEM structure of A2296-methylated Mycobacterium tuberculosis ribosome bound with SEQ-9
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.7 Å
Loop
- Sequence
- CUG*CG*CCUAAGGUAG*CGAAUG
- Length
- 21 nucleotides
- Bulged bases
- 7KGB|1|A|U|2209
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_7KGB_007 not in the Motif Atlas
- Homologous match to J4_9DFE_008
- Geometric discrepancy: 0.0777
- The information below is about J4_9DFE_008
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_42306.2
- Basepair signature
- cWW-tSS-cSS-cWH-cWW-tWH-tHS-cWW-cWW-tWW-F-cSH-F-F
- Number of instances in this motif group
- 6
Unit IDs
7KGB|1|A|C|2067
7KGB|1|A|U|2068
7KGB|1|A|G|2069
*
7KGB|1|A|C|2143
7KGB|1|A|G|2144
*
7KGB|1|A|C|2162
7KGB|1|A|C|2163
7KGB|1|A|U|2164
7KGB|1|A|A|2165
7KGB|1|A|A|2166
7KGB|1|A|G|2167
7KGB|1|A|G|2168
7KGB|1|A|U|2169
7KGB|1|A|A|2170
7KGB|1|A|G|2171
*
7KGB|1|A|C|2205
7KGB|1|A|G|2206
7KGB|1|A|A|2207
7KGB|1|A|A|2208
7KGB|1|A|U|2209
7KGB|1|A|G|2210
Current chains
- Chain A
- 23S rRNA
Nearby chains
- Chain C
- 50S ribosomal protein L2
- Chain a
- Small subunit ribosomal RNA; SSU rRNA
- Chain y
- Transfer RNA; tRNA
Coloring options: