J4_7KGB_012
3D structure
- PDB id
- 7KGB (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- CryoEM structure of A2296-methylated Mycobacterium tuberculosis ribosome bound with SEQ-9
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.7 Å
Loop
- Sequence
- GAG*CGAAAG*CCGUAAACGGUG*CC
- Length
- 23 nucleotides
- Bulged bases
- 7KGB|1|a|A|567, 7KGB|1|a|A|806
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_7KGB_012 not in the Motif Atlas
- Homologous match to J4_5J7L_003
- Geometric discrepancy: 0.0581
- The information below is about J4_5J7L_003
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_61885.6
- Basepair signature
- cWW-cWW-cWW-F-F-tHW-F-F-F-F-F-cWW-F-F
- Number of instances in this motif group
- 4
Unit IDs
7KGB|1|a|G|566
7KGB|1|a|A|567
7KGB|1|a|G|568
*
7KGB|1|a|C|755
7KGB|1|a|G|756
7KGB|1|a|A|757
7KGB|1|a|A|758
7KGB|1|a|A|759
7KGB|1|a|G|760
*
7KGB|1|a|C|801
7KGB|1|a|C|802
7KGB|1|a|G|803
7KGB|1|a|U|804
7KGB|1|a|A|805
7KGB|1|a|A|806
7KGB|1|a|A|807
7KGB|1|a|C|808
7KGB|1|a|G|809
7KGB|1|a|G|810
7KGB|1|a|U|811
7KGB|1|a|G|812
*
7KGB|1|a|C|872
7KGB|1|a|C|873
Current chains
- Chain a
- 16S rRNA
Nearby chains
- Chain A
- Large subunit ribosomal RNA; LSU rRNA
- Chain h
- 30S ribosomal protein S8
- Chain l
- 30S ribosomal protein S12
- Chain o
- 30S ribosomal protein S15
- Chain q
- 30S ribosomal protein S17
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