J4_7L08_004

3D structure

PDB id

7L08 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the human 55S mitoribosome-RRFmt complex.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.49 Å

Loop

Sequence

CUG*CC*GCAAAGGUAG*UGAAUG

Length

21 nucleotides

Bulged bases

7L08|1|A|U|2634

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_7L08_004 not in the Motif Atlas

Homologous match to J4_5J7L_026

Geometric discrepancy: 0.1514

The information below is about J4_5J7L_026

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_93343.1

Basepair signature

cWW-tSS-cSS-cWH-cWW-tWH-tHS-cWW-cWW-tWW-F-cSH-F-F

Number of instances in this motif group

4

Unit IDs

7L08|1|A|C|2544
7L08|1|A|U|2545
7L08|1|A|G|2546
*
7L08|1|A|C|2569
7L08|1|A|C|2570
*
7L08|1|A|G|2587
7L08|1|A|C|2588
7L08|1|A|A|2589
7L08|1|A|A|2590
7L08|1|A|A|2591
7L08|1|A|G|2592
7L08|1|A|G|2593
7L08|1|A|U|2594
7L08|1|A|A|2595
7L08|1|A|G|2596
*
7L08|1|A|U|2630
7L08|1|A|G|2631
7L08|1|A|A|2632
7L08|1|A|A|2633
7L08|1|A|U|2634
7L08|1|A|G|2635

Current chains

Chain A

16S RRNA

Nearby chains

Chain A3

Aurora kinase A-interacting protein

Chain AA

Small subunit ribosomal RNA; SSU rRNA

Chain D

39S ribosomal protein L2, mitochondrial