J4_7L08_008

3D structure

PDB id

7L08 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the human 55S mitoribosome-RRFmt complex.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.49 Å

Loop

Sequence

GAG*CAAUAG*CCCUAAACCUCA*UC

Length

23 nucleotides

Bulged bases

7L08|1|AA|A|942, 7L08|1|AA|A|1103, 7L08|1|AA|C|1106, 7L08|1|AA|C|1108

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_7L08_008 not in the Motif Atlas

Homologous match to J4_5J7L_003

Geometric discrepancy: 0.2589

The information below is about J4_5J7L_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_61885.6

Basepair signature

cWW-cWW-cWW-F-F-tHW-F-F-F-F-F-cWW-F-F

Number of instances in this motif group

4

Unit IDs

7L08|1|AA|G|941
7L08|1|AA|A|942
7L08|1|AA|G|943
*
7L08|1|AA|C|1052
7L08|1|AA|A|1053
7L08|1|AA|A|1054
7L08|1|AA|U|1055
7L08|1|AA|A|1056
7L08|1|AA|G|1057
*
7L08|1|AA|C|1098
7L08|1|AA|C|1099
7L08|1|AA|C|1100
7L08|1|AA|U|1101
7L08|1|AA|A|1102
7L08|1|AA|A|1103
7L08|1|AA|A|1104
7L08|1|AA|C|1105
7L08|1|AA|C|1106
7L08|1|AA|U|1107
7L08|1|AA|C|1108
7L08|1|AA|A|1109
*
7L08|1|AA|U|1132
7L08|1|AA|C|1133

Current chains

Chain AA

12S rRNA

Nearby chains

Chain A2

Coiled-coil-helix-coiled-coil-helix domain-containing protein 1

Chain A3

Aurora kinase A-interacting protein

Chain AJ

28S ribosomal protein S12, mitochondrial

Chain AL

28S ribosomal protein S15, mitochondrial

Chain AN

28S ribosomal protein S17, mitochondrial

Chain AT

28S ribosomal protein S25, mitochondrial