J4_7L20_004

3D structure

PDB id

7L20 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the human 39S mitoribosomal subunit in complex with RRFmt and EF-G2mt.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.15 Å

Loop

Sequence

CUG*CC*GCAAAGGUAG*UGAAUG

Length

21 nucleotides

Bulged bases

7L20|1|A|U|2634

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_7L20_004 not in the Motif Atlas

Homologous match to J4_5J7L_026

Geometric discrepancy: 0.1556

The information below is about J4_5J7L_026

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_93343.1

Basepair signature

cWW-tSS-cSS-cWH-cWW-tWH-tHS-cWW-cWW-tWW-F-cSH-F-F

Number of instances in this motif group

4

Unit IDs

7L20|1|A|C|2544
7L20|1|A|U|2545
7L20|1|A|G|2546
*
7L20|1|A|C|2569
7L20|1|A|C|2570
*
7L20|1|A|G|2587
7L20|1|A|C|2588
7L20|1|A|A|2589
7L20|1|A|A|2590
7L20|1|A|A|2591
7L20|1|A|G|2592
7L20|1|A|G|2593
7L20|1|A|U|2594
7L20|1|A|A|2595
7L20|1|A|G|2596
*
7L20|1|A|U|2630
7L20|1|A|G|2631
7L20|1|A|A|2632
7L20|1|A|A|2633
7L20|1|A|U|2634
7L20|1|A|G|2635

Current chains

Chain A

16S rRNA mitochondrial

Nearby chains

Chain D

39S ribosomal protein L2, mitochondrial