J4_7LH5_004
3D structure
- PDB id
- 7LH5 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the Thermus thermophilus 70S ribosome in complex with plazomicin, mRNA and tRNAs
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.27 Å
Loop
- Sequence
- GUGG*CGU*AAGAUCGU*GCC
- Length
- 18 nucleotides
- Bulged bases
- 7LH5|1|AV|U|8, 7LH5|1|AV|U|48, 7LH5|1|AV|C|49
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
7LH5|1|AV|G|7
7LH5|1|AV|U|8
7LH5|1|AV|G|9
7LH5|1|AV|G|10
*
7LH5|1|AV|C|26
7LH5|1|AV|G|27
7LH5|1|AV|U|28
*
7LH5|1|AV|A|44
7LH5|1|AV|A|45
7LH5|1|AV|G|46
7LH5|1|AV|A|47
7LH5|1|AV|U|48
7LH5|1|AV|C|49
7LH5|1|AV|G|50
7LH5|1|AV|U|51
*
7LH5|1|AV|G|65
7LH5|1|AV|C|66
7LH5|1|AV|C|67
Current chains
- Chain AV
- P-site tRNA fMet
Nearby chains
- Chain AA
- Small subunit ribosomal RNA; SSU rRNA
- Chain AM
- 30S ribosomal protein S13
- Chain B0
- 50S ribosomal protein L27
- Chain BA
- Large subunit ribosomal RNA; LSU rRNA
- Chain BQ
- 50S ribosomal protein L16
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