J4_7LH5_011

3D structure

PDB id

7LH5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with plazomicin, mRNA and tRNAs

Experimental method

X-RAY DIFFRACTION

Resolution

3.27 Å

Loop

Sequence

GCAAGUUGG*UG*CCGCAGUGAACAGG*CGC

Length

28 nucleotides

Bulged bases

7LH5|1|BA|G|1758, 7LH5|1|BA|G|1763

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

7LH5|1|BA|G|1674
7LH5|1|BA|C|1675
7LH5|1|BA|A|1676
7LH5|1|BA|A|1677
7LH5|1|BA|G|1678
7LH5|1|BA|U|1679
7LH5|1|BA|U|1680
7LH5|1|BA|G|1681
7LH5|1|BA|G|1682
*
7LH5|1|BA|U|1706
7LH5|1|BA|G|1707
*
7LH5|1|BA|C|1751
7LH5|1|BA|C|1752
7LH5|1|BA|G|1753
7LH5|1|BA|C|1754
7LH5|1|BA|A|1755
7LH5|1|BA|G|1756
7LH5|1|BA|U|1757
7LH5|1|BA|G|1758
7LH5|1|BA|A|1759
7LH5|1|BA|A|1760
7LH5|1|BA|C|1761
7LH5|1|BA|A|1762
7LH5|1|BA|G|1763
7LH5|1|BA|G|1764
*
7LH5|1|BA|C|1988
7LH5|1|BA|G|1989
7LH5|1|BA|C|1990

Current chains

Chain BA

23S ribosomal RNA

Nearby chains

Chain AA

Small subunit ribosomal RNA; SSU rRNA

Chain BE

50S ribosomal protein L3

Chain BO

50S ribosomal protein L14

Chain BT

50S ribosomal protein L19