J4_7LH5_013

3D structure

PDB id

7LH5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with plazomicin, mRNA and tRNAs

Experimental method

X-RAY DIFFRACTION

Resolution

3.27 Å

Loop

Sequence

UUG*CG*CCUAAGGUAG*CGAAAA

Length

21 nucleotides

Bulged bases

7LH5|1|BA|A|1971

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_7LH5_013 not in the Motif Atlas

Homologous match to J4_9DFE_008

Geometric discrepancy: 0.0744

The information below is about J4_9DFE_008

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_42306.1

Basepair signature

cWW-tSS-cSS-cWH-cWW-tWH-tHS-cWW-cWW-tWW-F-cSH-F-F

Number of instances in this motif group

5

Unit IDs

7LH5|1|BA|U|1833
7LH5|1|BA|U|1834
7LH5|1|BA|G|1835
*
7LH5|1|BA|C|1905
7LH5|1|BA|G|1906
*
7LH5|1|BA|C|1924
7LH5|1|BA|C|1925
7LH5|1|BA|U|1926
7LH5|1|BA|A|1927
7LH5|1|BA|A|1928
7LH5|1|BA|G|1929
7LH5|1|BA|G|1930
7LH5|1|BA|U|1931
7LH5|1|BA|A|1932
7LH5|1|BA|G|1933
*
7LH5|1|BA|C|1967
7LH5|1|BA|G|1968
7LH5|1|BA|A|1969
7LH5|1|BA|A|1970
7LH5|1|BA|A|1971
7LH5|1|BA|A|1972

Current chains

Chain BA

23S ribosomal RNA

Nearby chains

Chain AA

Small subunit ribosomal RNA; SSU rRNA

Chain AV

Transfer RNA; tRNA

Chain BD

50S ribosomal protein L2