J4_7LH5_023

3D structure

PDB id

7LH5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with plazomicin, mRNA and tRNAs

Experimental method

X-RAY DIFFRACTION

Resolution

3.27 Å

Loop

Sequence

CGAUAAA*UC*GCGC*GG

Length

15 nucleotides

Bulged bases

7LH5|1|DA|G|1271, 7LH5|1|DA|A|1272, 7LH5|1|DA|U|1273, 7LH5|1|DA|G|1647

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_7LH5_023 not in the Motif Atlas

Homologous match to J4_9DFE_003

Geometric discrepancy: 0.0589

The information below is about J4_9DFE_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_64571.6

Basepair signature

cWW-F-cWW-tSS-cWW-F-cWW

Number of instances in this motif group

4

Unit IDs

7LH5|1|DA|C|1270
7LH5|1|DA|G|1271
7LH5|1|DA|A|1272
7LH5|1|DA|U|1273
7LH5|1|DA|A|1274
7LH5|1|DA|A|1275
7LH5|1|DA|A|1276
*
7LH5|1|DA|U|1294
7LH5|1|DA|C|1295
*
7LH5|1|DA|G|1645
7LH5|1|DA|C|1646
7LH5|1|DA|G|1647
7LH5|1|DA|C|1648
*
7LH5|1|DA|G|2009
7LH5|1|DA|G|2010

Current chains

Chain DA

23S ribosomal RNA

Nearby chains

Chain D5

50S ribosomal protein L32

Chain DR

50S ribosomal protein L17

Chain DW

50S ribosomal protein L22