J4_7LS1_006

3D structure

PDB id

7LS1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S ribosome from mouse bound to eEF2 (Class II)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

AGAUG*CAGUG*CGACC*GAGGGUGUAAAU

Length

27 nucleotides

Bulged bases

7LS1|1|A2|U|2309, 7LS1|1|A2|U|2518

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

7LS1|1|A2|A|2306
7LS1|1|A2|G|2307
7LS1|1|A2|A|2308
7LS1|1|A2|U|2309
7LS1|1|A2|G|2310
*
7LS1|1|A2|C|2327
7LS1|1|A2|A|2328
7LS1|1|A2|G|2329
7LS1|1|A2|U|2330
7LS1|1|A2|G|2331
*
7LS1|1|A2|C|2340
7LS1|1|A2|G|2341
7LS1|1|A2|A|2342
7LS1|1|A2|C|2343
7LS1|1|A2|C|2344
*
7LS1|1|A2|G|2511
7LS1|1|A2|A|2512
7LS1|1|A2|G|2513
7LS1|1|A2|G|2514
7LS1|1|A2|G|2515
7LS1|1|A2|U|2516
7LS1|1|A2|G|2517
7LS1|1|A2|U|2518
7LS1|1|A2|A|2519
7LS1|1|A2|A|2520
7LS1|1|A2|A|2521
7LS1|1|A2|U|2522

Current chains

Chain A2

28S rRNA

Nearby chains

Chain T2

60S ribosomal protein L27

Chain a2

60S ribosomal protein L34