J4_7LS1_007

3D structure

PDB id

7LS1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S ribosome from mouse bound to eEF2 (Class II)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

GG*UGUGAA*UGGAAAGCG*CGUC

Length

21 nucleotides

Bulged bases

7LS1|1|A2|A|2451

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

7LS1|1|A2|G|2373
7LS1|1|A2|G|2374
*
7LS1|1|A2|U|2392
7LS1|1|A2|G|2393
7LS1|1|A2|U|2394
7LS1|1|A2|G|2395
7LS1|1|A2|A|2396
7LS1|1|A2|A|2397
*
7LS1|1|A2|U|2447
7LS1|1|A2|G|2448
7LS1|1|A2|G|2449
7LS1|1|A2|A|2450
7LS1|1|A2|A|2451
7LS1|1|A2|A|2452
7LS1|1|A2|G|2453
7LS1|1|A2|C|2454
7LS1|1|A2|G|2455
*
7LS1|1|A2|C|2471
7LS1|1|A2|G|2472
7LS1|1|A2|U|2473
7LS1|1|A2|C|2474

Current chains

Chain A2

28S rRNA

Nearby chains

Chain L2

60S ribosomal protein L19

Chain O2

60S ribosomal protein L22

Chain a2

60S ribosomal protein L34

Chain e2

60S ribosomal protein L38